http://www.rnasoft.ca/ WebThe HotKnots program predicts secondary structures of RNA molecules with or without pseudoknots. The HotKnots algorithm has been described by Ren et al [2]. New parameters have been estimated by Andronescu et al [1]. The source code of HotKnots, together with data and results obtained in [1], can be obtained from here.. Links
ProbKnot: fast prediction of RNA secondary structure including ...
WebPython wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack. - GitHub - ViennaRNA/RNAsketch: Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack. WebJul 1, 2011 · Ren J., et al. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots. RNA. 2005; 11:1494–1504. [Europe PMC free article] [Google Scholar] Rivas E., Eddy S.R. A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol. 1999; 285:2053–2068. [Google Scholar] dog tuxedo collar and cuffs
About HotKnots - RNAsoft
WebRNAs including non-coding RNAs; (2) IPknot and HotKnots are two of the best performing algorithms in the comparison performed by Puton et al. [6]; CCJ and Iterative HFold are … WebFeb 1, 2012 · The performance of RNA structure prediction methods also depends on the class of the RNA sequence. When tested on full-length biological RNAs, HotKnots, DotKnot, pknotsRG-mfe and pknotsRG-enf perform better on tRNAs than on RNase P, Group 1 intron, and tmRNA. WebThe HotKnots program predicts secondary structures of RNA molecules with or without pseudoknots. The HotKnots algorithm has been described by Ren et al [2]. New … fairfield glade aeration schedule